NIA is an apex Institute under the Department of AYUSH for promoting the growth and development of Ayurveda as a model Institute for evolving high standards of teaching, training, research and patient care and also to invoke scientific outlook to the knowledge of Ayurvedic System of Medicine. The Institute, an Autonomous Body under Department of AYUSH, Ministry of Health and Family Welfare, Govt. of India, is registered under the Rajasthan Societies Registration Act, 1958.

The erstwhile Government Ayurvedic College of Jaipur of the Govt. of Rajasthan was merged to form the Institute. All the teaching and non-teaching staff of the then Government Ayurvedic College of Jaipur and also the teaching staff of Government Ayurvedic College of Udaipur were screened for absorption in the Institute. Those staff recommended by the Screening Committee and approved by the Governing Body were finally absorbed in the Institute.

The City of Jaipur was established 238 years back and by linking with it, the Institute has a glorious tradition of about 145 years when the Department of Ayurveda was started in 1865 in the Maharaja Sanskrit College, Jaipur which gained popularity as the "Jaipur School of Thought". An independent Ayurvedic College was established in August 1946 by the Government of Rajasthan and this College was merged to form NIA in February 1976. This was one of the very few Ayurvedic Colleges in the country to introduce Post-Graduate Education in Ayurveda as early as in 1970.

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